Columns: 28
$ sampleID <chr> "2152449_068200035_0000", "2…
$ Well.ID <chr> "B01", "C01", "D01", "E01", …
$ Sample.ID.Barcode <chr> "2152449", "2154015", "21540…
$ Patient.ID <chr> "68200035", "68200040", "682…
$ Visit.code <chr> "0", "0", "1200", "1000", "1…
$ IDT.adapter.name <chr> "IDT10_UDI_Adapter2", "IDT10…
$ i5.index.forward <chr> "CGTAGAACAG", "ACCTAAGAGC", …
$ i5.index.reverse <chr> "CTGTTCTACG", "GCTCTTAGGT", …
$ i7.index.reverse <chr> "ATAAGCGGAG", "CGACCTTAAT", …
$ i7.index <chr> "CTCCGCTTAT", "ATTAAGGTCG", …
$ sample_id <chr> "2152449_068200035_0000", "2…
$ spike_in_Allobacillus_halotolerans_rel <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
$ spike_in_Imtechella_halotolerans_rel <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
$ spike_in_Allobacillus_halotolerans_counts <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
$ spike_in_Imtechella_halotolerans_counts <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
$ total_spike_in_rel <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
$ total_spike_in_counts <dbl> 0, 0, 0, 0, 0, 0, 0, 0, 0, 0…
$ CST <chr> "III", "IV-B", "IV-B", "IV-B…
$ subCST <chr> "III-B", "IV-B", "IV-B", "IV…
$ score <dbl> 0.9200522, 0.6396295, 0.7183…
$ pool <chr> "pool1", "pool1", "pool1", "…
$ Specimen.type <chr> "Vaginal Swab", "Vaginal Swa…
$ Volume.pooled..uL. <dbl> 3, 3, 3, 3, 3, 3, 3, 3, 3, 3…
$ Researcher <chr> "Jiawu", "Jiawu", "Jiawu", "…
$ Description <chr> "VIBRANT", "VIBRANT", "VIBRA…
$ Pool10 <chr> NA, NA, NA, NA, NA, NA, NA, …
$ Original.MGH.aliquot.Unique.identifier <dbl> NA, NA, NA, NA, NA, NA, NA, …
$ Site <chr> NA, NA, NA, NA, NA, NA, NA, …